Finally, until Funkenstein's Theology and the Scientific Imagination from the Middle Ages to the Seventeenth Century (1986), no one would have suspected any connection between late medieval metaphysics and contemporary neo-Darwinian atheism. But the metaphysical and epistemological assumptions of modern science and of antireligious, scientistic ideologies are clearly indebted to the emergence of metaphysical univocity that Funkenstein identified in medieval scholasticism beginning with John Duns Scotus.
Some more from his 2009 Logos article:
Funkenstein showed both that there was a deep affinity between theology and science among major intellectual figures in the seventeenth century and why this symbiosis proved fleeting: the underlying ontology— God “is” just like creation “is”—meant that God had to beat a progressive retreat as science explained more and more about the natural world. Scotus’s initial move is anything but an arcane curiosity from the distant past because it led through an unanticipated series of intellectual developments that include the scientific revolution, Isaac Newton’s physics and post-Newtonian deism, Immanuel Kant’s metaphysics and his sharp distinction between phenomena and noumena, the philosophical framework of nineteenth-century liberal Protestantism, and eventually the neo-Darwinian, scientistic atheism of the New Atheists.
And it turns out that Scotus believed in a different God than did the Biblical authors, Church Fathers, Aquinas, and millions of Christian lay people.
Well, of course, it will be argued—what “other” ontological framework could there be? One in which God is not conceptually domesticated, but is rather regarded as radically distinct from and noncompetitive with his creation, as the traditional doctrine of creation ex nihilo implies.
[...]
God conceptualized in this manner is not an “entity or being” at all; he cannot be conceived or visualized; he cannot be represented directly in any human categories whatsoever, whether visual, verbal, or conceptual. This is the same God written about with acuity by contemporary Catholic philosophers such as Robert Sokolowski and theologians such as Robert Barron. This is the same God in whom faithful Catholics believe today, whatever their level of explicit philosophical or theological awareness (my ninety-five-year-old grandmother, with her eighth-grade education, believes in, worships, and prays to this God).
We really ought to take away all that NEH money for the edition, burn all works of Scotus, and excommunicate anyone who says his name aloud. Because in the end, we all know that Aquinas was right about everything (except the immaculate conception...).
Update:
In leafing through Funkenstein's book, I came across a discussion of univocity on p. 26 that claims that existence is a divine attribute for Scotus (assuming, like the Thomists, that Scotus holds the same view on essence and existence as Aquinas). He cites as his proof for this and univocity generally the spurious Expositio in Metaphysicam, known since at least the 1920's to be spurious. But Funkenstein, like Brad Gregory, is an historian, which means they don't need to worry about such matters.
So it looks like the intellectual giants of our time are agreed and we have a common opinion: Scotistic univocity is bad and is the root of all evil in the world, and we know this because of all its bad effects on society. It is in fact so obviously bad and stoopid we do not need to make a single argument against it. Thus say the philosophers, theologians, and historians of our time.